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Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga.

https://arctichealth.org/en/permalink/ahliterature290937
Source
Genome Announc. 2018 Apr 05; 6(14):
Publication Type
Journal Article
Date
Apr-05-2018
Author
Miia R Mäkelä
Mao Peng
Zoraide Granchi
Thomas Chin-A-Woeng
Rosa Hegi
Sake I van Pelt
Steven Ahrendt
Robert Riley
Matthieu Hainaut
Bernard Henrissat
Igor V Grigoriev
Ronald P de Vries
Kristiina S Hildén
Author Affiliation
Department of Microbiology, University of Helsinki, Helsinki, Finland.
Source
Genome Announc. 2018 Apr 05; 6(14):
Date
Apr-05-2018
Language
English
Publication Type
Journal Article
Abstract
Here, we report the genome sequence of wood-decaying white-rot fungus Phlebia centrifuga strain FBCC195, isolated from Norway spruce (Picea abies) in Finnish Lapland. The 34.66-Mb genome containing 13,785 gene models is similar to the genome length reported for other saprobic white-rot species.
Notes
Cites: Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704 PMID 24297253
Cites: Genome Res. 2009 Jun;19(6):1117-23 PMID 19251739
Cites: BMC Genomics. 2015 Mar 11;16:170 PMID 25887563
Cites: Fungal Genet Biol. 2005 May;42(5):403-19 PMID 15809005
Cites: Bioinformatics. 2013 Apr 15;29(8):1072-5 PMID 23422339
Cites: Bioinformatics. 2004 Nov 1;20(16):2878-9 PMID 15145805
Cites: Fungal Genet Biol. 2014 Nov;72 :201-206 PMID 24951842
PubMed ID
29622620 View in PubMed
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Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments.

https://arctichealth.org/en/permalink/ahliterature273822
Source
Environ Microbiol. 2016 Jun 27;
Publication Type
Article
Date
Jun-27-2016
Author
Marina N Matos
Mariana Lozada
Luciano E Anselmino
Matías A Musumeci
Bernard Henrissat
Janet K Jansson
Walter P Mac Cormack
JoLynn Carroll
Sara Sjöling
Leif Lundgren
Hebe M Dionisi
Source
Environ Microbiol. 2016 Jun 27;
Date
Jun-27-2016
Language
English
Publication Type
Article
Abstract
Alginates are abundant polysaccharides in brown algae that constitute an important energy source for marine heterotrophic bacteria. Despite the key role of alginate degradation processes in the marine carbon cycle, little information is available on the bacterial populations involved in these processes. The aim of this work was to gain a better understanding of alginate utilization capabilities in cold coastal environments. Sediment metagenomes from four high-latitude regions of both Hemispheres were interrogated for alginate lyase gene homolog sequences and their genomic context. Sediments contained highly abundant and diverse bacterial assemblages with alginolytic potential, including members of Bacteroidetes and Proteobacteria, as well as several poorly characterized taxa. The microbial communities in Arctic and Antarctic sediments exhibited the most similar alginolytic profiles, whereas brackish sediments showed distinct structures with a higher proportion of novel genes. Examination of the gene neighborhood of the alginate lyase homologs revealed distinct patterns depending on the potential lineage of the scaffolds, with evidence of evolutionary relationships among alginolytic gene clusters from Bacteroidetes and Proteobacteria. This information is relevant for understanding carbon fluxes in cold coastal environments and provides valuable information for the development of biotechnological applications from brown algae biomass. This article is protected by copyright. All rights reserved.
PubMed ID
27348213 View in PubMed
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